I consider myself fairly savvy when it comes to Dropbox, but I learned a new tip from Mac OS X Hints.
If you get "Permission Denied" errors, you can try to "Fix Permissions" in Dropbox. This is not repairing disk permissions in Disk Utility, it's within the Dropbox app itself.
To get to it, open Dropbox preferences, then click "Account" and you'll see this:
Make sure that "Unlink This Computer" is highlighted (if it isn't, press Tab until it is).
Hold down the alt/option key and it