Considering that the Lion release today (which has gone swimmingly) was a vote of confidence, Apple has moved to get most of its boxed software out of the Apple Store completely, sending a notice out to retailers to discontinue titles like iWork '09, iLife '11, Aperture 3, and most of GarageBand's Jam Pack addons. All of that software will of course be available on the App Store with a download, but Apple won't be keeping them in the actual retail store any longer.
This follows Apple's actions earlier this year to remove a number of peripherals and retail games included inside Apple Stores. M